bionty.Readout#

class bionty.Readout(source=None, version=None, **kwargs)#

Bases: Entity

Experimental Factor.

1. Experimental Factor Ontology Edits of terms are coordinated and reviewed on: https://www.ebi.ac.uk/ols/ontologies/efo

Parameters:

  • source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_versions.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_versions.

Also see: bionty.Entity

Attributes

assay#

Assays.

assay_by_instrument#

Assays by instrument.

assay_by_molecule#

Assays by molecule.

assay_by_sequencer#

Assay by sequencer.

measurement#

Measurement.

ontology#

EFO.

Methods

df()#

DataFrame.

Return type:

DataFrame

get(term_id)#

Parse readout attributes from EFO.

Return type:

dict